| Accession Number: ENCR40010001 |
Category: RNaseP_bact_a |
| Cross-Ref: Nondisruptable_sequence_ID: CCNA_99919; Rfam:RF00010 |
Description: RNase P RNA (CCNA_R0061); Bacterial RNase P class A |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:528. |
| Nucleotide sequence: ACCAGAUGAUCUGUAAGCCGGGUUCUGUUCCGCCCCGCCCAUCCGAAGACAGGGAGACGGCGACGAUCAUUCCUCUAGGCCGGCCAUUGCUGGACGGCUCUCGCGACCUACCCGGAUCCUCUCAGCCAGUGACGGCCUAGUCGGCGCGAGGCCGACGCGGGAUCCCUAUUCGGUCUUGCUCCAGGCGGGGCUUGCCAUGCCGUCCCUGUCACCAGGUCCGCGGUGGGCUCUUACCCCACCCUUUCACCCUUCCCGCCCCGUAGGGAGGAGGUUUGCUUUCUGUGGCGCUAUCCCUGGGAUCGCUCCCGGUGGGCGUUACCCACCGCCUUGUCACCGUGGAGCCCGGACUUUCCUCGGCGUCCGAAGACGACGCGACCGCCCGAUCAUCUGGUC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -170.2 kcal/mol is given below. |
|
(((((((((((.(((((((((((...(((((((..((((..(((........)))...)))).............(((((((..((((((((((.((.((.((.........)))).)))).))).))))).)))))))((((((.....)))))))))))))....)))))).)))))....((((((((.......)))((((..(((.(((((...((((((((.......)))))).....(((((((((........)))))).)))..(((......)))))....)))))))).((((((((((((((........))))....))))).)))))..))))........(((((.......)))))..))))).))))))))))).
(-170.20)
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Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -176.64 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 0.00 %. |
| The ensemble diversity is 111.23 |
|
(((((((((((...{(((((((({{,.....(({{((((..,,,...,,.{((({{{((,,,.}|.,}.,)),}((((((((..((((((((((.((.((,({.........)))).)))).)))},)))).))))))))..((.((((((((((...((,...))...)))))))))).)).}}}}}}}}..|||.,||||,.((((....))))..,||((((((......,}}}}}}.....(((((((((........)))))).)))..{{,....,,)))|{.,,{{..{|||,.||||||||{|||,|,..}}}}}))},....|,,,}.)))))}))).}},.....{((((({{.....,,)),)},,))}.))))))))))).
[-176.64] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -116.61 kcal/mol is given below. |
|
(((((((((((....((((((((((......(((((((....................................((((((((..((((.(((((.((.((.((.........)))).)))).)))..)))).))))))))..((.((((((((((...((....))...)))))))))).))..))))))).............((((....)))).....((((((.......)))))).....(((((((((........)))))).)))..................................................................)))))))).))................................))))))))))).
{-116.61 d=76.43}
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