| Accession Number: ENCR40010002 |
Category: tRNA |
| Cross-Ref: Nondisruptable_sequence_ID: CCNA_99979; Rfam: RF00005 |
Description: tRNA (UAC) (CCNA_R0030) |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:529. |
| Nucleotide sequence: UGCAGAAGGACGUUUCCGGUCGUUGCGUUCGGAAUGAGAGGACACUAUAAGACGCGCUCCGAUUUGGGGCCCCGAGGGCUUCUCGGCCAGCCGGCGCUGCUCUUAGCAUCGUCCGUCACCGGUCCAAGAAGCUUUUGUUUCGCAUCGGCGUUUGACGGCUUGCCGUCGCGCGUCGAAGCGGAUAAAGGCCGCCGGCUUCGGAACUCCAUCGCGUGCUUGGGGGAAUGUCCCGAGUGGCAAAGGGGGGGGACUGUAAAUCCCCUGGCGUAAGCCUUCGUAGGUUCGAGUCCUACUUCCCCCACCAUGCGCGCGAUGAGUUCCGGAAGGCAGCGCCCUUUAAAAAGCAUGGGGG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -156.3 kcal/mol is given below. |
|
....(((((.((((.(((((((..((.(((((......((....)).........(((((.....))))).))))).))....))))).(((((((.((((...))))....(((....)))........(((((((((.(((.(((((((.((((((....)))))).))))))).)))))))))))))))))))((((((((((.(((((((((.((((((((...(((..........)))((((((.......))))))(((....)))...(((((.......)))))))))))))....))))))))))))))))))).)).)))).)))))..............
(-156.30)
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|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -161.83 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 0.01 %. |
| The ensemble diversity is 87.30 |
|
,{{.,,,((,{,,,,||{{|(({{((.((({{..,{,.,{{,,.},...,{,.{{((((({,...|||||,||||}|})|}}})))||.{{{||||,{{{|..,))}}.,},|||,..,})),,...,,.(((((((,(((((.(((((((.((((((....)))))).))))))).))))))))))))|||}}}|{{((((((({,(((((((((.((((((((...(((..........)))((((((.......))))))(((....)))...(((((.......)))))))))))))....))))))))))))))))))},})}}))),)}}}}.....,,..,,,,.
[-161.83] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -106.50 kcal/mol is given below. |
|
.......................................................(((((.....)))))............................((.....)).......................(((((((..((((.(((((((.((((((....)))))).))))))).)))).)))))))........(((((((((.(((((((((.((((((((...(((..........)))((((((.......))))))(((....)))...(((((.......)))))))))))))....)))))))))))))))))).............................
{-106.50 d=58.25}
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|