| Accession Number: ENCR40010004 |
Category: alpha_tmRNA/beta_tmRNA |
| Cross-Ref: Nondisruptable_sequence_ID: CCNA_99923; Rfam: RF01849/RF01850 |
Description: tmRNA1 (CCNA_R0049); Alphaproteobacteria transfer-messenger RNA; Betaproteobacteria transfer-messenger RNA |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:531. |
| Nucleotide sequence: UCCGGCUUCGGCCGAACUAUGGGGAUAAACGCGCACGUAAUAAGCGGACUGGACCCGGGUGCGAUUCCCGGCGGCUCCACCAAAUCUCUCCCGCGUUAUCACGGGACUGCAUGGGGCCGAUCAGCAUCGACAGACGUGUAAAGGUGUCUGCUUUCUCUCGGCUUGGCCCACCGUUUCGGGCCUUUAUCUAAAUGCGAACGAUAACUUCGCUGAAGAGUUCGCCGUCGCUGCGUAAUGCGGUGCAGGUGAAUUCGCCUCUUAAGUCCUAGGGGUUCAGAUCCCUAGGCGGGGCCCGGAGGGAGCCUGCCAACAGAAUCCC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -124 kcal/mol is given below. |
|
(((((....((((((.....(((((((.....((((((......(((.(((...(((((.......)))))((((((((.........(((((........))))).....))))))))..)))..)))....)))))).....))))).)).....)))))).(((((........)))))...........(((((.......)))))....(((((((((..((((((.....))))))..)))))))))(((((......(((((((((....))))))))).))))))))))((((..(((....)))..))))
(-124.00)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -128.9 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 0.04 %. |
| The ensemble diversity is 67.49 |
|
{(((({,..((((({.....((((((...(({((,(({.....|{{,.{{{...{||{|,,,,,,,)))}}((((((((.........(((((........))))).....)))))))).,}||,.|||.{,,|||}}}....})))))},}..,..)))))}.(((((........)))))...........(((((.......)))))....(((((((((..((((((,...,))))))..))))))))){{{{{....{.(((((((((....))))))))))))))))))))((((..(((....)))..))))
[-128.90] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -108.90 kcal/mol is given below. |
|
(((((.....(((((.......................................(((((.......)))))((((((((.........(((((........))))).....))))))))......................................)))))..(((((........)))))...........(((((.......)))))....(((((((((..((((((.....))))))..)))))))))(((((....(.(((((((((....))))))))))))))))))))((((..(((....)))..))))
{-108.90 d=43.24}
[ VIEW IN FORNA ]
|