Information In Noncoding For ENCR40010006

Accession Number:  ENCR40010006	Category:   non-coding element
Cross-Ref:   Nondisruptable_sequence_ID: Gap_0007	Description:   nondisruptable intergenic region
Organism:   Caulobacter crescentus	RefSeq:   NC_011916
Condition:   Rich medium	locus_tag:   -
Date:   2018/11/11	Reference:   Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:533.

Nucleotide sequence:   CUAAUGCCUAGGGGCUUUGACUCAAAAAUAUCAAGAAAAACAACGGCGAGGACGAGAAUAAAUAUCCUUAUACAGAUUAAAAUCUCGAUGGGCGCACCCCGAGCUUCUUUAUGCGGUUAGCGGGGAUGUAAUCCCAACCUCAAAAAAUGAACUCCAAUUCGAGUUCCAAGUCGAAUCUGUCAAAAAAGCUUCUCACUUUCGUGAUAGAAUAUUUUCCCUCAUAAUAUUCGGCCACGAAUAGUGAAUCUAAUUCGGCCCUGGAU

Molecular structure In Noncoding For ENCR40010006

Results for minimum free energy prediction

The optimal secondary structure in dot-bracket notation with a minimum free energy of -63.5 kcal/mol is given below.

......((..((((((..((((.........................((((.(((((......(((........))).....))))).((((.((((((((((((.........))))..))))).)))...)))).)))).......((((((......))))))..))))(((.((........)).)))(((((((((((...(((((((.........)))))))...)))))).))))).........)))))))).. (-63.50) [ VIEW IN FORNA ]

Results for thermodynamic ensemble prediction

The free energy of the thermodynamic ensemble is -67.72 kcal/mol.

The frequency of the MFE structure in the ensemble is 0.11 %.

The ensemble diversity is 39.50

......,({((((((((((({......................,,,,((((.(((((......(((........))).....))))).((((.((((((((.{({.,.......)),...))))).)))...)))).)))).......((((((......))))))...}}}|,,.{{}},,....}),,,,(((((((((((...(((((((.........)))))))...)))))).))))).........}))))))).. [-67.72]

The centroid secondary structure in dot-bracket notation with a minimum free energy of -48.10 kcal/mol is given below.

.......((((...(................................((((.(((((......(((........))).....))))).((((.((((((((...................))))).)))...)))).)))).......((((((......))))))..........................(((((((((((...(((((((.........)))))))...)))))).)))))..........)..)))).. {-48.10 d=25.91} [ VIEW IN FORNA ]