| Accession Number: ENCR40010007 |
Category: tRNA/tmRNA |
| Cross-Ref: Nondisruptable_sequence_ID: CCNA_99945; Rfam: RF00023 |
Description: tRNA (GCC) (CCNA_R0089); tRNA;transfer-messenger RNA |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:534. |
| Nucleotide sequence: UCCACAGGCGUUUUUGGGGGCGAAACAUUUUUCUCGAAAAAAGUUCGAGAAGAGGCUUGAUCCCAAAAAAAUCCCGGACUAGGUUCCGCGCCUCUUCGGGGGGCGACGCAAGUUCGAAACGCCGAAGAGACCAACGAUUUCCGAGAGUUACCGCAAGGUUUUCUUAGAAAGAAUUGGGGCUAUAGCUCAGCUGGUAGAGCGCUUGAAUGGCAUUCAAGAGGUCAGCGGUUCGACUCCGCUUAGCUCCACCAUCAAGG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -84.1 kcal/mol is given below. |
|
.((...((((((((((((..(((....(((((((((((.....)))))))))))..)))..)))))........((((((..((..(((.((((...)))).)))..)).))))))))))))).......((((...((((.(((((..(((....))).))))).))))...))))((((.......))))(((.((((.(((((((...))))))).....(((((.......)))))..)))).))).....))
(-84.10)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -88.45 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 0.09 %. |
| The ensemble diversity is 33.49 |
|
.{....((((((((((((,.(((....(((((((((((.....)))))))))))..))).,)))))},......((((((..((..(((.((((...)))).)))..)).)))))).}))))).......{{{{...((((.(((((..(((....))).))))).))))...}|||((({,..|||{...|{{{.||||.(((((((...))))))).....(((((.......))))),,)))),)}},....,,
[-88.45] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -81.80 kcal/mol is given below. |
|
......((((((((((((..(((....(((((((((((.....)))))))))))..)))..)))))).......((((((..((..(((.((((...)))).)))..)).)))))).)))))).......((((...((((.(((((..(((....))).))))).))))...))))...............(((.((((.(((((((...))))))).....(((((.......)))))..)))).))).......
{-81.80 d=23.15}
[ VIEW IN FORNA ]
|