| Accession Number: ENCR40010008 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0032 |
Description: nondisruptable intergenic region |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:535. |
| Nucleotide sequence: UCCGGGGUCGUAUUCGCGUCUUGCCUUUCGAAAAAGAGCGCUAUCGAACGGUGUUUCGGGAGCGGAAAAUAGCCUAGAAAAAACAGCCUCAUGUUUGUGAGCGCGUGCUGUUUUCGAUGCUUGCGUAUCCAUAUUGAGCAAUGAUUUUCCGAAAAGCGUUCCUCCUGUGGCGAUUUUGCGACAGGGGGGUCGGGAUAAUGAUUACUUUUUUGCAAUCAGAAU |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -67.7 kcal/mol is given below. |
|
....((((((((...(((((..((((((....)))).))(((.(((((......))))).))).(((((((((.........((.(((((((....))))).)))))))))))))))))).)))).)))).....(((.(((.(((((((((.......(((((((((.(((....))).))))))))))))))).))).))).)))(((((....))))).
(-67.70)
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|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -71.53 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 0.2 %. |
| The ensemble diversity is 35.23 |
|
....((({((((...(((((..{,{((({,..,,,}.|((((.,{{{{....,,))))).)))}(((((((((.........{{.(((((((....))))).))}})))))))))))))).)))).)))).....(((.(((.(((((((((.......(((((((((.(({....})).))))))))))))))).))).))).))},,{||....}}},,.
[-71.53] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -62.60 kcal/mol is given below. |
|
....((((((((...(((((...................(((..(((........)))..))).(((((((((.........((.(((((((....))))).)))))))))))))))))).)))).)))).....(((.(((.(((((((((.......(((((((((.(((....))).))))))))))))))).))).))).)))...............
{-62.60 d=24.26}
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|