| Accession Number: ENCR40010012 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0070 |
Description: nondisruptable intergenic region |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:539. |
| Nucleotide sequence: AGCCAGUCAAGCGACUUUUUCAAAGAAAAAGCUGAGCUCUUCUGGAAGAAAUACUUGGAAGCUCUUGCGAACAUCUUUUGCAUUUCAAGGAGCGCGGCUUCUAGCGAAACCGAAUUCCUGGGUCAACCGAACUUUUCAUUUUUGUUUUCCUUACCAGCCAGGCCGGAUCGGAGCGCAAAAAACACCGUUGGCGCGCCAUAGG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -50.9 kcal/mol is given below. |
|
..((((...(((..(((((((...)))))))....)))...))))..((((...((((..((((.((((((.....)))))).....(((((..(((.(((....))).)))..)))))))))...))))...)))).(((((((.((((...((.((...)).))...)))).)))))))...((..(((....)))..))
(-50.90)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -53.2 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 2.41 %. |
| The ensemble diversity is 34.27 |
|
.((,,(((,{(({.(((((((...)))))))..(((((.{{{,{{........}},))}})))).((((((.....)))))).....(((((..(((.(((....))).)))..))))){(,....))|{....,}}.(((((((.((((...((.((...)).))...)))).)))))))....}))))))..})......
[-53.20] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -42.30 kcal/mol is given below. |
|
.((..(((...((.(((((((...)))))))..(((((.....................))))).((((((.....)))))).....(((((..(((.(((....))).)))..)))))((.....))..........(((((((.((((...((.((...)).))...)))).)))))))....))..)))..))......
{-42.30 d=22.25}
[ VIEW IN FORNA ]
|