| Accession Number: ENCR40010013 |
Category: tRNA |
| Cross-Ref: Nondisruptable_sequence_ID: CCNA_99959; Rfam: RF00005 |
Description: tRNA (CAC) (CCNA_R0057) |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:540. |
| Nucleotide sequence: CCGAAGACACCGAGGUCAGAAACGAAAAAAGCCCGGCUAGGCCGGGCUUUUCAAGGACUUGCGAUGGUACCAGCUCUCGGGCUCGAACCGAGGACCUCUAGAUCCACAAUCUAGCGCUCUAACCAACUGAGCUAAGCCGGCUCAUCGCGAGGCGUUGUCUUUAGUGGGAUCGCCCUUCGGGAUCAAGCACCGAUCCCGAU |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -78.8 kcal/mol is given below. |
|
..(((((((.((..............(((((((((((...)))))))))))......((((((((((..((.((((((((.......))))).....((((((.....)))))).((((.........))))..))).)).)))))))))).)).)))))))...(((....))).((((((((.......)))))))).
(-78.80)
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|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -80.55 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 5.86 %. |
| The ensemble diversity is 13.74 |
|
..(((((((.((...,.......|,.{((((((((((...))))))))))),.....((((((((((..((.((((((((.......))))).....((((((.....)))))).((((.........))))..))).)).)))))))))).)).)))))))...(((....))).((((((((.......)))))))).
[-80.55] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -78.80 kcal/mol is given below. |
|
..(((((((.((..............(((((((((((...)))))))))))......((((((((((..((.((((((((.......))))).....((((((.....)))))).((((.........))))..))).)).)))))))))).)).)))))))...(((....))).((((((((.......)))))))).
{-78.80 d=8.02}
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|