Information In Noncoding For ENCR40010015

Accession Number:  ENCR40010015	Category:   tRNA
Cross-Ref:   Nondisruptable_sequence_ID: CCNA_99944; Rfam: RF00005	Description:   tRNA (CUG) (CCNA_R0090)
Organism:   Caulobacter crescentus	RefSeq:   NC_011916
Condition:   Rich medium	locus_tag:   -
Date:   2018/11/11	Reference:   Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:542.

Nucleotide sequence:   GGUGGUGCCCAGGAGAGGACUCGAACCUCCACGACCUUUCGGUCACUGGCACCUGAAGCCAGCGCGUCUACCAAUUCCGCCACCUGGGCCCGCUGUCGCAACCGGUUAGGUCGCCGCGAGGCCGGGACGUUUAGGGAAAGCCUCAGGCCGCGUCAACAGCGAAAAAACGACAAAUCGUGAUUUCGUUGCGAACCGGGC

Molecular structure In Noncoding For ENCR40010015

Results for minimum free energy prediction

The optimal secondary structure in dot-bracket notation with a minimum free energy of -75.3 kcal/mol is given below.

(((((.(((((((.((((.......))))...((((....)))).(((((.......))))).(((...........)))..)))))))))))).......((((((.((...))(((.((((..((.((((.....)))).)).)))).)))...((((((((..((((....))))..))))))))..)))))).. (-75.30) [ VIEW IN FORNA ]

Results for thermodynamic ensemble prediction

The free energy of the thermodynamic ensemble is -77.48 kcal/mol.

The frequency of the MFE structure in the ensemble is 2.93 %.

The ensemble diversity is 20.44

(((((.(((((((.((((.......))))...((((....)))).(((((.......))))).(((...........)))..)))))))))))).......((((({..,,,{|,(((.((((.,({.((((.....}})),)).)))).)))...((((((((..((((....))))..)))))))),,)))))).. [-77.48]

The centroid secondary structure in dot-bracket notation with a minimum free energy of -73.00 kcal/mol is given below.

(((((.(((((((.((((.......))))...((((....)))).(((((.......))))).(((...........)))..)))))))))))).......((((((........(((.((((.....((((.....))))....)))).)))...((((((((..((((....))))..))))))))..)))))).. {-73.00 d=13.04} [ VIEW IN FORNA ]