| Accession Number: ENCR40010017 |
Category: tRNA |
| Cross-Ref: Nondisruptable_sequence_ID: CCNA_99986; Rfam: RF00005 |
Description: tRNA (CAA) (CCNA_R0022) |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:544. |
| Nucleotide sequence: GUCGGGAGGCCUGAAAAAAGUUCUGAAAAGGUCGUUGCAUCCAUCCGAGUCGUGAGCUAUCUCCACCGCCUCGCCGGGCCCUGAGGGGUCUCGCCGUUCCUGCUGGGGAAUGGUGUAAUGGUAACACUGCGGUUUUUGGUACCGUCAUUCUAGGUUCGAGUCCUAGUUCCCCAGCCACUUC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -57.5 kcal/mol is given below. |
|
..((((((((.((.....((((((((...((.............))...))).))))).....))..))))).)))(((((....)))))...........(((((((((.(((((.......)))))(((((.......)))))....(((((.......))))))))))))))......
(-57.50)
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|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -59.65 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 3.06 %. |
| The ensemble diversity is 28.51 |
|
..((((((((.{,.....((((((((...((.............))...))).)))))...,,,,..))))).}})|{{{{.,,,))))),,.}},.....(((((((({.(((((.......)))))(((((.......)))))....(((((.......)))))}))))))))......
[-59.65] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -54.80 kcal/mol is given below. |
|
...(((((((........((((((((...((.............))...))).))))).........))))).)).(((((....)))))...........(((((((((.(((((.......)))))(((((.......)))))....(((((.......))))))))))))))......
{-54.80 d=18.60}
[ VIEW IN FORNA ]
|