| Accession Number: ENCR40010020 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0052 |
Description: upstream of nuoA (CCNA_02033) |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:547. |
| Nucleotide sequence: UUCAAACACCCGGCGCACAUUGAGAAACGUUCGCAACGAGAGACGUUUUGUCGGUUCUUCGAGAUGGCCGUUGACACGAGUCUUCACCCGACAUAUCAGACGCGCCUCGCCGAUUGGCGGGUCGCACUUUCGCCUCGGCGAAGGGGUAUGCGGAUGUAGCUCAGUUGGUUAGAGC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -60.1 kcal/mol is given below. |
|
..........((((.((..((((((..((..((.((((.....)))).)).))..)).))))..))))))((((((((((.((.((.(((.((((((....(((.((((((....)))))).))).(((((((....)))))))))))))))).)).))))).))..)))))...
(-60.10)
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|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -63.33 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 0.53 %. |
| The ensemble diversity is 54.79 |
|
..........{(((.((..(((((,.{((,,((,((((.....}}}}.}|,||,|}},,}}},,}}}}}|{,{{,|||{|}|{,|{.{{{.{{{{{{....(((.((((((....)))))).))).(((((((....)))))))}))}))))),)),,}))),)),}))}.....
[-63.33] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -45.00 kcal/mol is given below. |
|
..........((((.(...(((.............(((.....))).............)))...))))).......(((....((.(((.((((((....(((.((((((....)))))).))).(((((((....)))))))))))))))).))...))).............
{-45.00 d=39.86}
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|