| Accession Number: ENCR40010021 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0093 |
Description: origin of replication (gap1) |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:548. |
| Nucleotide sequence: GCCCGGACGUCCCUUAAGAUCUUUCUAACAUAUAUUAAUAAGAAAUUAAGAUUGAAGGAGGGAGCGGAAGGGCAACUGCAAAGUGGGGAAAACCCCUGUGAGGCGAGUGACUCGCACAGCCCGUCCCGGCUUUCCCCCAGGCCUUCCCACAUGGGGUUAACGCUCUGUUAAUC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -53.2 kcal/mol is given below. |
|
((((...((((((((..((((((.......(((....))).......))))))....)))))).))...))))....(((.((((.....((((((((((.(((..(((.....))).)))......(((((......)))))....)))).))))))..)))).))).....
(-53.20)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -57.36 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 0.12 %. |
| The ensemble diversity is 51.86 |
|
((((...((((((((..(((((({{{....,......,,.}}}....})))))....)))))).))...))))..,,..,.|||((((,...|}}|(((({{,{,,{...)))))),,},,..}}},}))}},.{{{{{||....,||...})))){{{{{|,..}))}},..
[-57.36] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -31.60 kcal/mol is given below. |
|
((((...((((((((..(((((((((..............)))....))))))....)))))).))...)))).............................................................(((((............))))).((((.....))))...
{-31.60 d=35.42}
[ VIEW IN FORNA ]
|