| Accession Number: ENCR40010024 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0042 |
Description: nondisruptable intergenic region |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:551. |
| Nucleotide sequence: ACAGAGCGCCUCCCUCGCGGCCGUGAAUUCGCGCCGCGAAAUCUUGGCGGCUGGAGUCGAUGAUUGGCUGGAUUGAGUUGAUAGAGUCUUUCAACCGAGGCCGGCCAAGCUGGUUCGUGAGGGUGAAUCUGGGAUUUAGAGUAAAGUGUCGCAGUUCAACUCACCAGCC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -66.4 kcal/mol is given below. |
|
.(((..((((....(((((((.(((....))))))))))......)))).)))..........((((((((.(((.(((((.((...)).))))))))..))))))))((((((....(((..((((.(((.(((............))).))))))).))))))))).
(-66.40)
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|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -68.9 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 1.72 %. |
| The ensemble diversity is 22.37 |
|
.(((..((((....(((((({{(((....))))))))))......)))).)))..........((((((((.(((.(((((.{{...}}.))))))))..))))))))((((({..,{(((..((((.(((.(((............))).))))))).))))))))).
[-68.90] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -66.30 kcal/mol is given below. |
|
.(((..((((....(((((((.(((....))))))))))......)))).)))..........((((((((.(((.(((((.((...)).))))))))..))))))))(((((....((((..((((.(((.(((............))).))))))).))))))))).
{-66.30 d=13.96}
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|