| Accession Number: ENCR40010036 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0080 |
Description: nondisruptable intergenic region |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:563. |
| Nucleotide sequence: CCCCGAAAACACGAUCAAUUUCGCCGACUGCACUUAAUGGCCAGUAAACAGCGAAUAGUUUUCAGAGAUUUUCUUUUGGUUUAUUUGUAUUUACCGUUAUUUGUUCUUAACCAUGCACUCCGCGAUCGCUGCCAAGC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -23 kcal/mol is given below. |
|
....................((((.((.((((...((((((..(((((..((((((((...((((((......)))))).)))))))).))))).))))))............)))).)).))))..(((....)))
(-23.00)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -25.65 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 1.36 %. |
| The ensemble diversity is 22.35 |
|
...........,,.......((((.((.((((...((((((..(((((..((((((((...{(((((,...,})))})).)))))))).))))).)))))}.,.....,,...)))).)).))))..(((....)))
[-25.65] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -21.40 kcal/mol is given below. |
|
....................((((.((.((((...((((((..(((((..((((((((...((((((.....)).)))).)))))))).))))).))))))............)))).)).))))..(((....)))
{-21.40 d=14.95}
[ VIEW IN FORNA ]
|