| Accession Number: ENCR40010038 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0029 |
Description: nondisruptable intergenic region |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:565. |
| Nucleotide sequence: CGGGAAGCUCCUUGGCUUGAAAUCGUACGAACGAUUUAAUCGUGUGCGAUAUAAAUUCAAGAGGUGGGGUGCGAAAAAGAUCGUGCGCGAUCGAAUUGUUGUCAGCGCCCCCGGGUUGGCAAGCGUCGAUCG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -45.5 kcal/mol is given below. |
|
......(((((....(((((((((((((..(((((...)))))))))))).....))))))....)))))((((......))))...(((((((....((((((((.((...))))))))))...)))))))
(-45.50)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -47.64 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 3.11 %. |
| The ensemble diversity is 21.38 |
|
......,{{((,...(((((((((((((..(((((...)))))))))))).....))))))....)))||((((......))))}}.(((((((....((((((((.{{...)}))))))))..,)))))))
[-47.64] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -44.90 kcal/mol is given below. |
|
........(((....(((((((((((((..(((((...)))))))))))).....))))))....)))((((((......)))))).(((((((....((((((((.((...))))))))))...)))))))
{-44.90 d=13.85}
[ VIEW IN FORNA ]
|