| Accession Number: ENCR40010041 |
Category: tRNA |
| Cross-Ref: Nondisruptable_sequence_ID: CCNA_99969; Rfam: RF00005 |
Description: tRNA (UCA) (CCNA_R0043) |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:568. |
| Nucleotide sequence: CUCCGGACAGGUGGCCGAGUGGUUUAAGGCAGCGGUCUUGAAAACCGCCGUAGGUGGAAGCCUACCGUGGGUUCGAAUCCCACCCUGUCCGCCAGAAUUCCAAGUUUCUUGUAAAAUCAGAGUCUUAGCG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -42.5 kcal/mol is given below. |
|
...((((((((.((.((.((..((((((((....)))))))).))))))((((((....)))))).(((((.......)))))))))))))..........(((.(((.((......))))).)))....
(-42.50)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -46.01 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 0.34 %. |
| The ensemble diversity is 26.57 |
|
...((((((((.,,.,{.(({{((((((((....))))))},.))))))((((((....)))))).(((((.......)))))))))))))..,|,.....{{(.|{||,|......,}))}.}},....
[-46.01] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -37.70 kcal/mol is given below. |
|
...((((((((.......((((((((((((....)))))))..))))).((((((....)))))).(((((.......)))))))))))))............(..((...........))..)......
{-37.70 d=17.99}
[ VIEW IN FORNA ]
|