| Accession Number: ENCR40010045 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0001 |
Description: origin of replication (gap2) |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:572. |
| Nucleotide sequence: ACCGGACUCGUUCCGCGUCUUUGGACAAUCGGGAUUCAGACUUCGGGGGAUGCGGCGCAGGCUUGGGGAUGAUAGGCGAGCAAUGCGACCGUUGAUCACAGCGGCGCCGUGUCACGACGCUGUUG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -47.3 kcal/mol is given below. |
|
.(((((.((((((((.(((....)))...))))))...)).)))))..(((((((((((.(((((...........)))))..)))).))))..))).((((((((.(((...))).))))))))
(-47.30)
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|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -48.23 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 22.13 %. |
| The ensemble diversity is 5.31 |
|
.(((((.((((((((.(((....)))...))))))...)).))))),,{,,((((((((.(((((...........)))))..)))).))))..,)).((((((((.(((...))).))))))))
[-48.23] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -46.20 kcal/mol is given below. |
|
.(((((.((((((((.(((....)))...))))))...)).))))).....((((((((.(((((...........)))))..)))).))))......((((((((.(((...))).))))))))
{-46.20 d=3.71}
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|