| Accession Number: ENCR40010047 |
Category: tRNA |
| Cross-Ref: Nondisruptable_sequence_ID: CCNA_99972; Rfam: RF00005 |
Description: tRNA (CCA) (CCNA_R0038) |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:574. |
| Nucleotide sequence: CUGUAGAGCAGCCGCCUGCUGAUGUUUCGGAGCGUAGCGCAGCCUGGUAGCGCAUCUGUUUUGGGAGCAGAGGGUCGCAGGUUCAAAUCCUGCCGCUCCGACCAUCGGUAAGGCACUUUGGGAG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -49.8 kcal/mol is given below. |
|
((((...))))..(((((((((((..((((((((..((((.........)))).(((((((...))))))).....(((((.......))))))))))))).))))))).))))..........
(-49.80)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -51.6 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 5.43 %. |
| The ensemble diversity is 10.62 |
|
((((...})}},,(((((((((((..((((((((..((((.,,...,,.)))).(((((((...))))))).....(((((.......))))))))))))).)))))))},)))..........
[-51.60] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -49.80 kcal/mol is given below. |
|
((((...))))..(((((((((((..((((((((..((((.........)))).(((((((...))))))).....(((((.......))))))))))))).)))))))).)))..........
{-49.80 d=7.03}
[ VIEW IN FORNA ]
|