| Accession Number: ENCR40010066 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0068 |
Description: upstream of CCNA_02705 |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:593. |
| Nucleotide sequence: GUCGAAGGCCAUCGAAGGGCAGAAAAAUUCGCGCUUCACACAGCGAGCGUUGCGAAAAUGCCGCUAUAGGUUGCGAUAUUGCACCGCAAAAAACCCCGACCGGAUCCGGAC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -29.3 kcal/mol is given below. |
|
((((..((((...((((.((.(((...))))).))))....((((.(((((.....)))))))))...)))).)))).((((...))))......(((........)))..
(-29.30)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -31.22 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 4.44 %. |
| The ensemble diversity is 20.31 |
|
((((..{(,,...((((.((.((,...})))).))))....((((.(((((.....)))))))))...||||{||,...|||,,}}},......,,||,|,{....)))..
[-31.22] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -18.90 kcal/mol is given below. |
|
.............((((.((.((.....)))).))))....((((.(((((.....)))))))))..............................................
{-18.90 d=14.15}
[ VIEW IN FORNA ]
|