| Accession Number: ENCR40010089 |
Category: non-coding element |
| Cross-Ref: Nondisruptable_sequence_ID: Gap_0021 |
Description: upstream of CCNA_00748 |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:616. |
| Nucleotide sequence: GCCGAAAGUGGGAGCCGGUUUCGGCGCUCGUCACGCUCUAAGUAUUUGAUUUAGAGCCUUGUCAUCGCGUCGAAACGAUUUCGUUUCGACGCGCAAGGC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -48 kcal/mol is given below. |
|
(((((((.(((...))).))))))).........(((((((((.....)))))))))((((....((((((((((((....))))))))))))))))..
(-48.00)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -48.93 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 22.25 %. |
| The ensemble diversity is 4.69 |
|
(((((((.(((...))).))))))).........{{(((((((.....)))))))||((((,...{(((((((((((....))))))))))))))))},
[-48.93] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -47.50 kcal/mol is given below. |
|
(((((((.(((...))).)))))))..........((((((((.....))))))))(((((....((((((((((((....))))))))))))))))).
{-47.50 d=3.34}
[ VIEW IN FORNA ]
|