| Accession Number: ENCR40010137 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00033 |
Description: TSS position: -; CCNA leading gene: CCNA_00033 ; CCNA lagging gene: CCNA_00033 ; annotation of leading gene: polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:664. |
| Nucleotide sequence: GUCCGAGGGUUCACGUCCUCAAACCCGCCUGUCACACUGGAUGAGGAUCAUCGGGCCGGCUUCCGUUAGCCGUCCGCCCCUGUCCGCCCCGACGGGAAUCCGCCCGCGGGAACCGAAAGAAGAAAA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -42.7 kcal/mol is given below. |
|
((((((.(((((.(((((....................))))).))))).))))))(((((......)))))...((........))((((.((((......))))))))................
(-42.70)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -44.68 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 4.02 %. |
| The ensemble diversity is 33.37 |
|
,{({({,((({{.,(((({{,...,,............))}))})))),.,|||||(((((......))))),,,}..|{{,,,.,.{(((.((((......))))))))...,,...........
[-44.68] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -22.70 kcal/mol is given below. |
|
........................................................(((((......)))))...............((((.((((......))))))))................
{-22.70 d=23.96}
[ VIEW IN FORNA ]
|