| Accession Number: ENCR40010140 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00043 |
Description: TSS position: -; CCNA leading gene: CCNA_00043 ; CCNA lagging gene: CCNA_00043 ; annotation of leading gene: N utilization substance protein A |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:667. |
| Nucleotide sequence: ACCGUCUACUUCCCCUUCGCGUGGGUCAUCGACGCCAAGCUCGUCAUGACCGACGCCCUGAUGGAGCGGGGGGCCAAGCAACGGGCCGCCCGCCUCGAAUCCGACAACGAAGACCUGUCCGAAAGUGAAGAGGACUGACC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -57.1 kcal/mol is given below. |
|
...(((....(((.((((((((.((((((.((((.......)))))))))).))))((....)).(((((.((((........)))).)))))......((.((((.........)))).))....)))).)))..))).
(-57.10)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -58.42 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 11.75 %. |
| The ensemble diversity is 15.98 |
|
...(((....(((.((((((((.((((((.((((.......)))))))))).)))),{....}|,(((((.((((........)))).))))).}}...{{.((((.........)))).)}....)))).)))..))).
[-58.42] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -53.70 kcal/mol is given below. |
|
...(((....(((.((((((((.((((((.((((.......)))))))))).)))).........(((((.((((........)))).))))).......(.((((.........)))).).....)))).)))..))).
{-53.70 d=10.24}
[ VIEW IN FORNA ]
|