| Accession Number: ENCR40010149 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00070 |
Description: TSS position: -; CCNA leading gene: CCNA_00070 ; CCNA lagging gene: CCNA_00071 ; annotation of leading gene: porphobilinogen deaminase |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:676. |
| Nucleotide sequence: GUUGCGGGCUUUCCGCCGCUCCUGUAGCAGCGAAGACGAAUUUUCGUCUCCGCAGGUAACGUUCAGACCG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -22.5 kcal/mol is given below. |
|
(((((((((........)).)).))))).(((.((((((....)))))).))).(((.........))).
(-22.50)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -23.87 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 10.84 %. |
| The ensemble diversity is 15.31 |
|
(({((((({.....,,.)}.,,,}}})).(((.((((((....)))))).))).{||.........,}}.
[-23.87] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -14.40 kcal/mol is given below. |
|
(((((..................))))).(((.((((((....)))))).))).((...........)).
{-14.40 d=10.69}
[ VIEW IN FORNA ]
|