| Accession Number: ENCR40010151 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_99993 |
Description: TSS position: -; CCNA leading gene: CCNA_99993 ; CCNA lagging gene: CCNA_99993 ; annotation of leading gene: tRNA-Thr |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:678. |
| Nucleotide sequence: UGCAAGACGGCGCUUGCCGAGCGGCUCGCGCGCCGCUAAAUAGGCGCUCCCUUCGCUCUGGAGCGCCCGCUUCGGAGCCCGUGGG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -43.3 kcal/mol is given below. |
|
........((((((((...((((((......))))))...))))))))(((...((((((((((....))))))))))....)))
(-43.30)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -43.64 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 57.69 %. |
| The ensemble diversity is 2.42 |
|
........((((((((...((((((......))))))...))))))))(((...((((((((((....))))))))))....)))
[-43.64] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -43.30 kcal/mol is given below. |
|
........((((((((...((((((......))))))...))))))))(((...((((((((((....))))))))))....)))
{-43.30 d=1.33}
[ VIEW IN FORNA ]
|