| Accession Number: ENCR40010159 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00155 |
Description: TSS position: 69a ; CCNA leading gene: CCNA_00155 ; CCNA lagging gene: CCNA_00155 ; annotation of leading gene: DNA polymerase III |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:686. |
| Nucleotide sequence: GUUUCGGCCUCUUCCCCGCGCGCGUCUUUUCGCUAAUGUCGGCGGUCCCUUCUCCACGGGUUCGCGCGGGGCUGAUUCUCCCCGGCGGCGGCUGAACCCGACAUCUGGACCGGACUA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -39.6 kcal/mol is given below. |
|
..(((((((.((..((((((((.......(((((......))))).(((........)))..))))))))((((........)))))).))))))).(((..........)))....
(-39.60)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -41.98 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 2.12 %. |
| The ensemble diversity is 39.17 |
|
,.{((((((,{..,((((((((,,......|||{......})}||.(((........)))..)))}||}}(,,|.....,,,)}}}}}.})))))},|||......}}.,))),...
[-41.98] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -23.50 kcal/mol is given below. |
|
..............((((((((........((((......))))..(((........)))..))))))))...............................................
{-23.50 d=26.65}
[ VIEW IN FORNA ]
|