Information In Noncoding For ENCR40010160

Accession Number:  ENCR40010160 Category:   promoter; regulatory region
Cross-Ref:   Regulatory_region_ID: RR_00159 Description:   TSS position: 178b ; CCNA leading gene: CCNA_00159 ; CCNA lagging gene: CCNA_00159 ; annotation of leading gene: DNA gyrase subunit B
Organism:   Caulobacter crescentus RefSeq:   NC_011916
Condition:   Rich medium locus_tag:   -
Date:   2018/11/11 Reference:   Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:687.
Nucleotide sequence:   UGUAAUAUUGCUCGACGAAGUCGCCGCGCAUCUCGACCUUACCCGGCGAGCCGCUCUGGCUGACGAACUCACGGCGCUCAAGCUCCAGGCCUUCCUGACCGGCACGGACGAGUCGCUGUUCGACCAUCUCAAGGGUCGGGCGCUAGGCGUUCGCGUGGGCGACGCCGGCCUGACUACUCUGGAAGACGAAUGACCGAGAACACCGAAGACCAAGUUCCCGACCUGUCGACCCCGGAAA


Molecular structure In Noncoding For ENCR40010160

Results for minimum free energy prediction
The optimal secondary structure in dot-bracket notation with a minimum free energy of -77.6 kcal/mol is given below.
.........(((.((((..(((((((.((..((((.((......))))))..))..)))).)))..........)).)).)))..((((((.....(((((.......)).)))((.((((((((........))))))))))..(((((.(((....)))))))))))))).....(((((....(((.....((.((((............)))).)).....)))...))))).. (-77.60) [ VIEW IN FORNA ]

Results for thermodynamic ensemble prediction
The free energy of the thermodynamic ensemble is -80.69 kcal/mol.
The frequency of the MFE structure in the ensemble is 0.67 %.
The ensemble diversity is 60.30
.........{{({((,...(((((((.((..((((.((......))))))..))..)))).))).....,.,|||{{{{..,,{,({{(((.....{{{{|,,..,,,}),)})||}||((((({........|||||||}||..(((({{(((....))))))))}))))).....(((((....{{{.....((.((((............)))).))...,}))),..}))}}.. [-80.69]


The centroid secondary structure in dot-bracket notation with a minimum free energy of -60.10 kcal/mol is given below.
...................(((((((.((..((((.((......))))))..))..)))).))).....................((((((..........................((((((((........))))))))....((((..(((....))).)))))))))).....(((((............((.((((............)))).))...........))))).. {-60.10 d=42.13} [ VIEW IN FORNA ]