| Accession Number: ENCR40010161 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_99992 |
Description: TSS position: -; CCNA leading gene: CCNA_99992 ; CCNA lagging gene: CCNA_99992 ; annotation of leading gene: tRNA-Arg |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:688. |
| Nucleotide sequence: CGUUUGCGCCGGCCUCGCCUUUCGGCUAAGACCCGCUUCCCGCCUCCUGGGUUUCCAGGAAGGUCGCAG |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -23 kcal/mol is given below. |
|
....(((((((((...)))....(((.(((.....)))...)))((((((....)))))).)).)))).
(-23.00)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -24.72 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 6.1 %. |
| The ensemble diversity is 17.21 |
|
...,((((({((,{{.{{{....)))..}}.}}.}}.....||{((((((....)))))},)),}))).
[-24.72] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -16.50 kcal/mol is given below. |
|
....(((...((.(..(((....)))...).)).........((((((((....)))))).))..))).
{-16.50 d=12.32}
[ VIEW IN FORNA ]
|