| Accession Number: ENCR40010176 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00308 |
Description: TSS position: -; CCNA leading gene: CCNA_00308 ; CCNA lagging gene: CCNA_00308 ; annotation of leading gene: hypothetical protein |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:703. |
| Nucleotide sequence: CCCUAGUUAGGACCGGAAUUUCCGAAGGAUCGCGCCGCCU |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -6.00 kcal / mol is given below. |
|
.(((....)))..(((....(((...))).....)))...
(-6.00)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -7.16 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 15.27 %. |
| The ensemble diversity is 9.67 |
|
.(({....}))..(((,...|||}..||,.....)),,,.
[-7.16] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -4.60 kcal/mol is given below. |
|
.(((....)))..(((.....)))................
{ -4.60 d=7.60}
[ VIEW IN FORNA ]
|