| Accession Number: ENCR40010177 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00309 |
Description: TSS position: -; CCNA leading gene: CCNA_00309 ; CCNA lagging gene: CCNA_00309 ; annotation of leading gene: cytosolic protein |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:704. |
| Nucleotide sequence: CCAUUGAUCCUUAACCGUGUCGGGCAUAUCGAGCUGCCAUAACUAUAAUUCCUCGCAGGAAC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -8.50 kcal / mol is given below. |
|
................((....((((........))))...)).....(((((...))))).
(-8.50)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -9.43 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 22.27 %. |
| The ensemble diversity is 6.44 |
|
................{{....((((........))))...}}.....{((((...))))}.
[-9.43] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -7.90 kcal/mol is given below. |
|
......................((((........))))..........(((((...))))).
{ -7.90 d=4.06}
[ VIEW IN FORNA ]
|