| Accession Number: ENCR40010180 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00321 |
Description: TSS position: 72a ; CCNA leading gene: CCNA_00321 ; CCNA lagging gene: CCNA_00321 ; annotation of leading gene: LSU ribosomal protein L21P |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:707. |
| Nucleotide sequence: GCCCUCUUGUGUGCUUUCGUCGCGCGCCUCGGCUGAAUCCGCCGCUACGCCGUUGACUCCCGAGCCUUGGGCUGUAUAAGUCGCGCCCUCUUCGCCCGCCGGGUUUCCGAGCGGGCGUUCCCUAUUUUGCGAACGCACGUUUUUAAGGCGCUAACCU |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -54.1 kcal/mol is given below. |
|
(((((....(((((.(((((...(((...((((.......))))...)))(((.((((....((((...)))).....))))))).......((((((((((....))).)))))))...........))))).)))))......))).))......
(-54.10)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -56.73 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 1.39 %. |
| The ensemble diversity is 24.18 |
|
((({,...,(((((.(((((,{,(((...((((.......))))...)))||,,((((....((((...)))).....)))))}}.......((((((((((....))).)))))))...........))))).)))))......})),}}......
[-56.73] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -50.80 kcal/mol is given below. |
|
((((.....(((((.(((((...(((...((((.......))))...)))....((((....((((...)))).....))))..........((((((((((....))).)))))))...........))))).))))).......)).))......
{-50.80 d=15.62}
[ VIEW IN FORNA ]
|