| Accession Number: ENCR40010181 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00340 |
Description: TSS position: 38a ; CCNA leading gene: CCNA_00340 ; CCNA lagging gene: CCNA_00341 ; annotation of leading gene: succinyl-CoA synthetase subunit beta |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:708. |
| Nucleotide sequence: CCUUCACCUUAUCGCCCACACGCGGUUGCGCCUGCGAAACAGCGCUCCUAUAACCCGGCCACAUUUCAGAAAGCCGUCGUCGAGACCGGGCCCUCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -19.9 kcal/mol is given below. |
|
.............((((......((..((((.((.....)))))).))........(((.............)))(((.....))).)))).....
(-19.90)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -21.6 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 6.37 %. |
| The ensemble diversity is 21.22 |
|
.............(({{....|,{{|.(((,,((.....))))))..,.....,,,(((.............}}}{{{...,.))}.)))).....
[-21.60] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -9.90 kcal/mol is given below. |
|
.............((((..........(((..((.....)).)))...........(((.............))).((.....))..)))).....
{ -9.90 d=14.50}
[ VIEW IN FORNA ]
|