| Accession Number: ENCR40010186 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00365 |
Description: TSS position: -; CCNA leading gene: CCNA_00365 ; CCNA lagging gene: CCNA_00365 ; annotation of leading gene: ornithine decarboxylase |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:713. |
| Nucleotide sequence: GCUCCGGCGGACCCGAAGUCCUCUAAACGCUGCUAACGCCGGCCUGGGUUUAACUUCCAACAGGGGGUUACGUGAA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -19.8 kcal/mol is given below. |
|
((((.(((((((.....))))......((..((....))))))).)))).((((((((....))))))))......
(-19.80)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -21.48 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 6.6 %. |
| The ensemble diversity is 19.52 |
|
{(,{,((|((((.....))))......,{{,{{....)}}))),,))},.((((((((....))))))))......
[-21.48] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -12.50 kcal/mol is given below. |
|
........((((.....)))).............................((((((((....))))))))......
{-12.50 d=12.34}
[ VIEW IN FORNA ]
|