| Accession Number: ENCR40010194 |
Category: promoter; regulatory region |
| Cross-Ref: Regulatory_region_ID: RR_00466 |
Description: TSS position: -; CCNA leading gene: CCNA_00466 ; CCNA lagging gene: CCNA_00466 ; annotation of leading gene: glycosyltransferase |
| Organism: Caulobacter crescentus |
RefSeq: NC_011916 |
| Condition: Rich medium |
locus_tag: - |
| Date: 2018/11/11 |
Reference: Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:721. |
| Nucleotide sequence: GAUAGGCGAGUGUAGGUCGUUUUUGUCAUUCAGGAAGGGAAGCGUUCUUAAAUUUCCUGAAUAUUAAGUAUUAUAGCUACGAUUGGAGCGACGA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -22.1 kcal/mol is given below. |
|
...............((((((((.(((((((((((((..(((....)))...))))))))))....(((......)))..))).))))))))..
(-22.10)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -23.44 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 11.34 %. |
| The ensemble diversity is 10.23 |
|
...............((((((((.((((((((((((({{((,...}))}...))))))))))....(((......)))..))).))))))))..
[-23.44] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -20.70 kcal/mol is given below. |
|
...............((((((((.(((((((((((((...............))))))))))....(((......)))..))).))))))))..
{-20.70 d=6.87}
[ VIEW IN FORNA ]
|