Information In Noncoding For ENCR40010197

Accession Number:  ENCR40010197	Category:   promoter; regulatory region
Cross-Ref:   Regulatory_region_ID: RR_99991	Description:   TSS position: -; CCNA leading gene: CCNA_99991 ; CCNA lagging gene: CCNA_99991 ; annotation of leading gene: tRNA-Ser
Organism:   Caulobacter crescentus	RefSeq:   NC_011916
Condition:   Rich medium	locus_tag:   -
Date:   2018/11/11	Reference:   Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:724.

Nucleotide sequence:   AGUCCGGCCCCCGCUUUCCUGCCGUGGAUCUCAGCAAGCUCUGACGGUCCGGCCGCAGACCGGCGGCGAAGUCCGCCCGCCAGGCGGCCGCCAAAUUCGGUUGCAGGCGGAUGAUUUCCCGCCUGCGGCGCUGACCGCAAAAAAGCUUGGAAAGAAAGCGCACCGGGGGCUUGCGUCUUCUGGGCGACGCCGCUAGGUAUCGCGCCCUCGACCUCGGGCGGCAAUUAUCGGCCUCCUGAACGGCGCCU

Molecular structure In Noncoding For ENCR40010197

Results for minimum free energy prediction

The optimal secondary structure in dot-bracket notation with a minimum free energy of -116.9 kcal/mol is given below.

.....((((((((......(((.((...(((...((((((.((.(((((..((((((....(((((.((((((...(((((..(((((((.......))))))).)))))..)))))))))))))))))...)))))))....))))))...)))..))))).)))))))).((((((((.((((((.(((....))).))))((((........))))(((........))).)).))).))))).. (-116.90) [ VIEW IN FORNA ]

Results for thermodynamic ensemble prediction

The free energy of the thermodynamic ensemble is -119.05 kcal/mol.

The frequency of the MFE structure in the ensemble is 3.04 %.

The ensemble diversity is 45.43

.....((((((((,,.,,.,{{,{(,,,(((...((((({.|{.(((((..((((((....(((((.((((((.,.(((((..(((((((.......))))))).)))))..)))))))))))))))))...))))))}....))))))...))).,))}},.}))))))).((((((((.((((((.(((....))).))))((((........))))(((........))).)).))).))))).. [-119.05]

The centroid secondary structure in dot-bracket notation with a minimum free energy of -111.90 kcal/mol is given below.

.....((((((((...............(((...((((((.((.(((((..((((((....(((((.((((((...(((((..(((((((.......))))))).)))))..)))))))))))))))))...)))))))....))))))...)))........)))))))).((((((((.((((((.(((....))).))))((((........))))(((........))).)).))).))))).. {-111.90 d=28.62} [ VIEW IN FORNA ]