Information In Noncoding For ENCR40010208

Accession Number:  ENCR40010208	Category:   promoter; regulatory region
Cross-Ref:   Regulatory_region_ID: RR_00530	Description:   TSS position: -; CCNA leading gene: CCNA_00530 ; CCNA lagging gene: CCNA_00531 ; annotation of leading gene: LSU ribosomal protein L10P
Organism:   Caulobacter crescentus	RefSeq:   NC_011916
Condition:   Rich medium	locus_tag:   -
Date:   2018/11/11	Reference:   Christen B, et al (2011). The essential genome of a bacterium. Mol Syst Biol, 7:735.

Nucleotide sequence:   UUGAAAUCUCCCCCGUCUUCGUCUAUACGGCGCGCCUUCUCCGAUGGACUCCGGUCCGUUGGCGAACCUGUUUGAGAACAACGGGGCGUGGGGUCACCAACGCCGUAACCGAGGAAGAGCCCUUCCUCGCCGUCGGGAGACAGGGAUAGAGACGCCAAGUCUUCCUGCUCGUGACCCCCUUCCUCGUGUUGGGCCGGUCCGAGACCGGAACGCGGCCGACUUUCCUUGAAACAGGCACAUGCGACUCGCACGCGGGAGCGAUCCCGCUUGGGUUUCGCAUCUGGCUGCCGGAAUGGUCCGGCCGCUGUUAUUGAGUAGGAGACCGCAA

Molecular structure In Noncoding For ENCR40010208

Results for minimum free energy prediction

The optimal secondary structure in dot-bracket notation with a minimum free energy of -146 kcal/mol is given below.

......(((((((.((((((......(((((.....(((.(((((((((....))))))))).))).(((((.......)))))(((((.((....)).)))))......(((((((....))))))))))))..)))))).)))...)))).((...((((.((((((((((((.(((...........)))((((((...))))))...((((((((((((((......(((.((.((((((....((.((((((....)))))).))....)))))).)).)))..)))).))).))))))).)))).)))))))))))).)).. (-146.00) [ VIEW IN FORNA ]

Results for thermodynamic ensemble prediction

The free energy of the thermodynamic ensemble is -152.23 kcal/mol.

The frequency of the MFE structure in the ensemble is 0.00 %.

The ensemble diversity is 66.56

......((((,((,((((((......{((((,.,,.(((.(((((((((....))))))))).))),(((((,{....})))))((((({({....)).})))}......(((((((....))))))))))))}})))))).)))...)))}.{{...((({{((((((((((((.{({...........)))((((((...))))))...((((((((((((((..,...(((.((.(((((({{{,,,.((((((....)))))).))}}..)))))).)).))).,)))).)))}})))))).)))),,))))))))))).}).. [-152.23]

The centroid secondary structure in dot-bracket notation with a minimum free energy of -118.50 kcal/mol is given below.

......((((....((((((.......((((.....(((.(((((((((....))))))))).))).((((.........))))(((((..........)))))......(((((((....)))))))))))...)))))).......)))).((...(((..(((((((.((((.(((...........)))((((((...))))))...((((((.(((((((......(((.((.((((((((.....((((((....))))))...))..)))))).)).)))..)))).)))..)))))).))))..))))))).))).)).. {-118.50 d=44.88} [ VIEW IN FORNA ]