| Accession Number: ENCR40120016 |
Category: - |
| Cross-Ref: - |
Description: tRNA-Arg |
| Organism: Escherichia coli O157:H7 str. EDL933 |
RefSeq: NZ_CP008957 |
| Condition: LB agar |
locus_tag: locus_tag:EDL933_RS18955 |
| Date: 2020/6/18 |
Reference: Warr, A. R., Hubbard, T. P., Munera, D., Blondel, C. J., Zur Wiesch, P. A., Abel, S., ... & Waldor, M. K. (2019). Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization. PLoS pathogens, 15(8), e1007667. |
| Nucleotide sequence: GCATCCGTAGCTCAGCTGGATAGAGTACTCGGCTACGAACCGAGCGGTCGGAGGTTCGAATCCTCCCGGATGCACCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -28.50 kcal/mol is given below. |
|
(((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
(-28.50)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -29.64 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 15.78 %. |
| The ensemble diversity is 15.79 |
|
((((((({{(((..{{{.....,}}}.{|{||}},,...||}}}.,}},(((((.......)))))}))))))....
[-29.64] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -16.64 kcal/mol is given below. |
|
(((((((..........................................(((((.......))))))))))))....
{-16.64 d=11.62}
[ VIEW IN FORNA ]
|