| Accession Number: ENCR40120025 |
Category: rrf |
| Cross-Ref: RFAM:RF00001 |
Description: 5S ribosomal RNA |
| Organism: Escherichia coli O157:H7 str. EDL933 |
RefSeq: NZ_CP008957 |
| Condition: LB agar |
locus_tag: locus_tag:EDL933_RS25060 |
| Date: 2020/6/18 |
Reference: Warr, A. R., Hubbard, T. P., Munera, D., Blondel, C. J., Zur Wiesch, P. A., Abel, S., ... & Waldor, M. K. (2019). Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization. PLoS pathogens, 15(8), e1007676. |
| Nucleotide sequence: CCTGGCGGCCTTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGC |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -45.50 kcal/mol is given below. |
|
((((((((.........((((....)))).((((((((((...((.((...(((..((...))..)))...)))).))))))))))..(((.(((....))))))..)))))))).
(-45.50)
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|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -47.06 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 7.95 %. |
| The ensemble diversity is 29.39 |
|
((((((((,.....,,.((((....)))).((((((((((...{{{((...{||..,{,{.||..)}}...)))).)))))))))),{((|.{((....)))))),.)))))))).
[-47.06] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -33.41 kcal/mol is given below. |
|
((((((((.........((((....)))).((((((((((....................................))))))))))......(((....))).....)))))))).
{-33.41 d=20.29}
[ VIEW IN FORNA ]
|