| Accession Number: ENCR40120026 |
Category: - |
| Cross-Ref: - |
Description: tRNA-Asp |
| Organism: Escherichia coli O157:H7 str. EDL933 |
RefSeq: NZ_CP008957 |
| Condition: LB agar |
locus_tag: locus_tag:EDL933_RS25065 |
| Date: 2020/6/18 |
Reference: Warr, A. R., Hubbard, T. P., Munera, D., Blondel, C. J., Zur Wiesch, P. A., Abel, S., ... & Waldor, M. K. (2019). Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization. PLoS pathogens, 15(8), e1007677. |
| Nucleotide sequence: GGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -28.10 kcal/mol is given below. |
|
(((((((..((((.........))))((((.(((((...))))))))).(((((.......))))))))))))....
(-28.10)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -29.03 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 22.15 %. |
| The ensemble diversity is 8.10 |
|
(((((((..{{{(.........))}}{(((.(((((...)))))}))}.(((((.......))))))))))))....
[-29.03] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -28.10 kcal/mol is given below. |
|
(((((((..((((.........))))((((.(((((...))))))))).(((((.......))))))))))))....
{-28.10 d=5.31}
[ VIEW IN FORNA ]
|