| Accession Number: ENCR40130001 |
Category: - |
| Cross-Ref: - |
Description: tRNA-Cys |
| Organism: Providencia stuartii strain BE2467 |
RefSeq: NZ_CP017054 |
| Condition: LB medium |
locus_tag: locus_tag:BGK56_RS00915 |
| Date: 2020/6/28 |
Reference: Johnson, A. O., et al. (2020). Transposon Insertion Site Sequencing of Providencia stuartii: Essential Genes, Fitness Factors for Catheter-Associated Urinary Tract Infection, and the Impact of Polymicrobial Infection on Fitness Requirements. Msphere, 5(3). |
| Nucleotide sequence: GGCGCGTTAGCAAAGCGGTTATGCACCGGATTGCAAATCCGTGTAGCTCGGTTCGACTCCGGGACGCGCCTCCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -28.70 kcal/mol is given below. |
|
(((((((((((...((((...((((......))))...))))...)))(((.......))).))))))))....
(-28.70)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -29.93 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 13.66 %. |
| The ensemble diversity is 18.54 |
|
(((((((({((...,{{|,,.((((,,{{{{|,,,,}}))))}},,|{(((.......)))}))))))))....
[-29.93] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -18.20 kcal/mol is given below. |
|
((((((((...................(((.......))).......((((.......))))))))))))....
{-18.20 d=13.60}
[ VIEW IN FORNA ]
|