Information In Noncoding For ENCR40130014

Accession Number:  ENCR40130014	Category:   -
Cross-Ref:   -	Description:   tRNA-Trp
Organism:   Providencia stuartii strain BE2467	RefSeq:   NZ_CP017054
Condition:   LB medium	locus_tag:   locus_tag:BGK56_RS14790
Date:   2020/6/28	Reference:   Johnson, A. O., et al. (2020). Transposon Insertion Site Sequencing of Providencia stuartii: Essential Genes, Fitness Factors for Catheter-Associated Urinary Tract Infection, and the Impact of Polymicrobial Infection on Fitness Requirements. Msphere, 5(16).

Nucleotide sequence:   AGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGCCTCTCCGCCCCTGCCA

Molecular structure In Noncoding For ENCR40130014

Results for minimum free energy prediction

The optimal secondary structure in dot-bracket notation with a minimum free energy of -27.20 kcal/mol is given below.

(((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))).... (-27.20) [ VIEW IN FORNA ]

Results for thermodynamic ensemble prediction

The free energy of the thermodynamic ensemble is -28.67 kcal/mol.

The frequency of the MFE structure in the ensemble is 9.22 %.

The ensemble diversity is 14.30

(((((((.,(((({{{{.....(((((((((.......)))))}))))...||}}.}}}},,,,.))))))).... [-28.67]

The centroid secondary structure in dot-bracket notation with a minimum free energy of -23.40 kcal/mol is given below.

(((((((...(((((((.....(((((((((.......))))).))))...)))).)))......))))))).... {-23.40 d=10.28} [ VIEW IN FORNA ]