Information In Noncoding For ENCR40130017

Accession Number:  ENCR40130017	Category:   -
Cross-Ref:   -	Description:   tRNA-Leu
Organism:   Providencia stuartii strain BE2467	RefSeq:   NZ_CP017054
Condition:   LB medium	locus_tag:   locus_tag:BGK56_RS15420
Date:   2020/6/28	Reference:   Johnson, A. O., et al. (2020). Transposon Insertion Site Sequencing of Providencia stuartii: Essential Genes, Fitness Factors for Catheter-Associated Urinary Tract Infection, and the Impact of Polymicrobial Infection on Fitness Requirements. Msphere, 5(19).

Nucleotide sequence:   GCCGAGGTGGTGAAATTGGTATACACGCTACCTTGAGGTGGTAGTGCCTACAAAACGGGCGTACGGGTTCAAGTCCCGTCCTCGGCACCA

Molecular structure In Noncoding For ENCR40130017

Results for minimum free energy prediction

The optimal secondary structure in dot-bracket notation with a minimum free energy of -34.50 kcal/mol is given below.

((((((((((.((((((.((((....((((((.......))))))((((.......)))))))).))))....))))).))))))).... (-34.50) [ VIEW IN FORNA ]

Results for thermodynamic ensemble prediction

The free energy of the thermodynamic ensemble is -35.84 kcal/mol.

The frequency of the MFE structure in the ensemble is 11.44 %.

The ensemble diversity is 22.29

((((((((((,({{{((.({{{..,,((((((....,,,)))}))((((.......))))))}}.}}}),,..,)))).))))))).... [-35.84]

The centroid secondary structure in dot-bracket notation with a minimum free energy of -29.60 kcal/mol is given below.

((((((((((.....((.((((....((((((.......))))))((((.......)))))))).))........))).))))))).... {-29.60 d=15.72} [ VIEW IN FORNA ]