| Accession Number: ENCR40130025 |
Category: - |
| Cross-Ref: - |
Description: tRNA-Lys |
| Organism: Providencia stuartii strain BE2467 |
RefSeq: NZ_CP017054 |
| Condition: LB medium |
locus_tag: locus_tag:BGK56_RS19040 |
| Date: 2020/6/28 |
Reference: Johnson, A. O., et al. (2020). Transposon Insertion Site Sequencing of Providencia stuartii: Essential Genes, Fitness Factors for Catheter-Associated Urinary Tract Infection, and the Impact of Polymicrobial Infection on Fitness Requirements. Msphere, 5(27). |
| Nucleotide sequence: GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -28.20 kcal/mol is given below. |
|
(((((((..(((.....))).((.(((((((.......))))))).))(((((.......))))))))))))....
(-28.20)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -29.02 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 26.42 %. |
| The ensemble diversity is 8.43 |
|
(((((((..(((,....,,,.((.(((((((.......))))))).))(((((.......))))))))))))....
[-29.02] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -27.80 kcal/mol is given below. |
|
(((((((..............((.(((((((.......))))))).))(((((.......))))))))))))....
{-27.80 d=5.82}
[ VIEW IN FORNA ]
|