| Accession Number: ENCR40140015 |
Category: - |
| Cross-Ref: GeneID:2986944 |
Description: tRNA-Asp |
| Organism: Mycoplasma pneumoniae M129 |
RefSeq: NC_000912 |
| Condition: LB agar |
locus_tag: locus_tag:MPNt11 |
| Date: 2020/7/10 |
Reference: Lluch-Snar, M., et al. (2015). Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium. Molecular systems biology, 11(1), 794. |
| Nucleotide sequence: GGTTCCATGGTGTAGTGATAACATATCTCCCTGTCACGGAGGGGTTGCGGGTTTGATTCCCGTTGGAACCGCCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -26.50 kcal/mol is given below. |
|
(((((((.(((((.((....)))))))(((((.......)))))..(((((.......))))))))))))....
(-26.50)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -27.20 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 32.05 %. |
| The ensemble diversity is 5.69 |
|
(((((((.(((((.((....))))))){((((.......))))}..(((((.......))))))))))))....
[-27.20] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -26.50 kcal/mol is given below. |
|
(((((((.(((((.((....)))))))(((((.......)))))..(((((.......))))))))))))....
{-26.50 d=3.36}
[ VIEW IN FORNA ]
|