| Accession Number: ENCR40140022 |
Category: - |
| Cross-Ref: GeneID:2986936 |
Description: tRNA-Tyr |
| Organism: Mycoplasma pneumoniae M129 |
RefSeq: NC_000912 |
| Condition: LB agar |
locus_tag: locus_tag:MPNt22 |
| Date: 2020/7/10 |
Reference: Lluch-Snar, M., et al. (2015). Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium. Molecular systems biology, 11(1), 801. |
| Nucleotide sequence: GGACAGGTAGCGAAGTGGCTAAACGCTTCTGACTGTAGATCAGACACCTTCATGGTTTCGGGAGTTCGAATCTCTCCCTGTCCACCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -29.10 kcal/mol is given below. |
|
(((((((....((((((......))))))...(((.....)))..(((.....)))...(((((.......))))))))))))....
(-29.10)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -30.39 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 12.32 %. |
| The ensemble diversity is 10.86 |
|
(((((((....((((((......)))))).|.||{.....}}|{.(((.....))).}}(((((.......))))))))))))....
[-30.39] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -27.00 kcal/mol is given below. |
|
(((((((....((((((......))))))................(((.....)))...(((((.......))))))))))))....
{-27.00 d=6.84}
[ VIEW IN FORNA ]
|