| Accession Number: ENCR40140025 |
Category: - |
| Cross-Ref: GeneID:2986939 |
Description: tRNA-Leu |
| Organism: Mycoplasma pneumoniae M129 |
RefSeq: NC_000912 |
| Condition: LB agar |
locus_tag: locus_tag:MPNt27 |
| Date: 2020/7/10 |
Reference: Lluch-Snar, M., et al. (2015). Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium. Molecular systems biology, 11(1), 804. |
| Nucleotide sequence: GCACTCGTGGCGGAATGGTAGACGCGCTAGACTTAGGATCTAGTTTCATTGTGGAGTGGGGGTTCAAGTCCCTTCGAGTGCACCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -26.80 kcal/mol is given below. |
|
((((((((((((............)))))(((((.((((((...(((......)))...)))))))))))....)))))))....
(-26.80)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -28.19 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 10.42 %. |
| The ensemble diversity is 19.98 |
|
(((((((,((((..........,,)})}}(((((.((((((..,{(({,,...}))}},))))))))))),,..)))))))....
[-28.19] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -22.30 kcal/mol is given below. |
|
(((((((.((((............)))).(((((.((((((..................)))))))))))....)))))))....
{-22.30 d=13.69}
[ VIEW IN FORNA ]
|