| Accession Number: ENCR40140028 |
Category: - |
| Cross-Ref: GeneID:2986919 |
Description: tRNA-Val |
| Organism: Mycoplasma pneumoniae M129 |
RefSeq: NC_000912 |
| Condition: LB agar |
locus_tag: locus_tag:MPNt30 |
| Date: 2020/7/10 |
Reference: Lluch-Snar, M., et al. (2015). Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium. Molecular systems biology, 11(1), 807. |
| Nucleotide sequence: GGATTGTTAGCTCAGCTGGGAGAGCATATGCCTTACAAGCATAGGGTCGGGGGTTCGATCCCCTCACAATCCACCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -26.30 kcal/mol is given below. |
|
(((((((..((((........))))....((((((......)))))).((((((...))))))..)))))))....
(-26.30)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -27.51 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 14.02 %. |
| The ensemble diversity is 15.92 |
|
(((((((..((((........))))....((((({......)))))).(((((,...,,)))),.)))))))....
[-27.51] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -17.10 kcal/mol is given below. |
|
(((((((..((((........))))....((((((......))))))..................)))))))....
{-17.10 d=11.28}
[ VIEW IN FORNA ]
|