| Accession Number: ENCR40140029 |
Category: - |
| Cross-Ref: GeneID:2986931 |
Description: tRNA-Thr |
| Organism: Mycoplasma pneumoniae M129 |
RefSeq: NC_000912 |
| Condition: LB agar |
locus_tag: locus_tag:MPNt31 |
| Date: 2020/7/10 |
Reference: Lluch-Snar, M., et al. (2015). Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium. Molecular systems biology, 11(1), 808. |
| Nucleotide sequence: GCCGAATTAGCTCAAGGGTAGAGCGATGCACTCGTAATGCATAGGCTACAGGTTCAATTCCTGTATTCGGCACCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -23.60 kcal/mol is given below. |
|
((((((...((((.......)))).(((((.......)))))....((((((.......))))))))))))....
(-23.60)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -24.58 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 20.44 %. |
| The ensemble diversity is 10.91 |
|
((((((,..((((.......)))).(((({.......))))}..,,|(((((.......))))))))))))....
[-24.58] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -22.30 kcal/mol is given below. |
|
((((((...((((.......)))).(((((.......))))).....(((((.......))))).))))))....
{-22.30 d=7.57}
[ VIEW IN FORNA ]
|