| Accession Number: ENCR40140033 |
Category: - |
| Cross-Ref: GeneID:2986932 |
Description: tRNA-Leu |
| Organism: Mycoplasma pneumoniae M129 |
RefSeq: NC_000912 |
| Condition: LB agar |
locus_tag: locus_tag:MPNt35 |
| Date: 2020/7/10 |
Reference: Lluch-Snar, M., et al. (2015). Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium. Molecular systems biology, 11(1), 812. |
| Nucleotide sequence: GTCGGAGTGGTGGAATGGTAGACACGCAAGCTTGAGGGGCTTGTGGTCGCAAGACTGTGCCAGTTCAAGTCTGGTCTCCGACACCA |
Results for minimum free energy prediction |
| The optimal secondary structure in dot-bracket notation with a minimum free energy of -31.70 kcal/mol is given below. |
|
(((((((.((((((.((((((((.(((((((((...)))))))))))).........))))).))))...))...)))))))....
(-31.70)
[ VIEW IN FORNA ]
|
Results for thermodynamic ensemble prediction |
| The free energy of the thermodynamic ensemble is -33.80 kcal/mol. |
| The frequency of the MFE structure in the ensemble is 3.32 %. |
| The ensemble diversity is 16.53 |
|
(((((((.,{{{{{.{{((,(((.(((((((({...}))))))))))).,...,,,,}||||,}}},...)),,.)))))))....
[-33.80] |
| The centroid secondary structure in dot-bracket notation with a minimum free energy of -25.90 kcal/mol is given below. |
|
(((((((........((((.(((.(((((((((...))))))))))))..........)))).............)))))))....
{-25.90 d=11.44}
[ VIEW IN FORNA ]
|