| Protein Id: YP_009513010.1 |
Length: 1330 aa |
| Description: spike protein Betacoronavirus Erinaceus/VMC/DEU/2012. |
Molecule type: linear |
| Data category: VRL |
Date: 3-Aug-20 |
| Source: Betacoronavirus Erinaceus/VMC/DEU/2012 |
| Class virus: Coronaviridae |
Virus name: Betacoronavirus |
| Host: Erinaceus europaeus |
Authors: Corman;V.M.; Kallies;R.; Philipps;H.; Gopner;G.; Muller;M.A.; Eckerle;I.; Brunink;S.; Drosten;C. and Drexler;J.F. |
| Title: Characterization of a novel betacoronavirus related to middle East respiratory syndrome coronavirus in European hedgehogs |
Journal: J. Virol. 88 (1); 717-724 (2014) |
| Taxonomy: Betacoronavirus Erinaceus/VMC/DEU/2012 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus. |
| db_xref: """taxon:1385427, CDD:318618, CDD:312790, CDD:279880, CDD:279881, GeneID:37627011""" |
| Sequence: MIRSACLLMCLLMFIKATPSEGTCISVDMQPSYFIKNWSMPINMSKADGVLYPVERTYSNITITLEGLFPHQADRGDMYVYSQSHKGRPFISNYSLVTNDFGNGIVIRIGSAANKTGSPIISNIASNFQIMKKLYPALLFGSAVGKFPANNKTGAYFNHSLVILPEKCGTVITALYCVLEPKNDTNCTGSSGYVSYVLFENFSCDATTDGNLKNSLQQWFNIKDCLFEKNYNVTDDEREEWFGIIQDQQGVHLYTSRKNGYSNNMFLFATLPIYDQILYYTVMPRSINASNYASYHAFSAFYIYKLHKINYMVDFDVNGYITRAVDCGYNDYTQLQCSYGQFDMDSGVYSASYFNARSRGYYYEAAELTECDLDVLFKNDAPIIANYSRRVFTNCNYNLTKLLSLVQVDEFVCHKTTPEALATGCYSSLTVDWFALPFSMKSTLAIGSAEAISMFNYNQDYSNPTCRIHAAVTANVSTALNFTANANYAYISRCQGVDGKPILLQPGQMTNIACRSGVLARPSDADYFGYSFQGRNYYLGRKSYKPKTDEGDVQMVYVITPKYDKGPDTVCPLKDMGAASSSLDGLLGQCIDYDIHGVVGRGVFQVCNTTGIASQIFVYDGFGNIIGFHSKNGTYYCMAPCVSVPVSVIYDKSSDVHATLYSSVECNHIKSVATVFSRQTESKLRSSDNGLLQTAVGCVIGFRNTSDTVEDCTLPLGQSLCAKPPSFSSRSTNVNNTFALVHMLFQNPLKVSVLNSTEFQVSIPQNFSFGITEEFIETSIQKVTVDCKQYVCNGFERCEQLLVQYGQFCSKINQALHGVNLRQDDATKSLFEDIKVPQSVPLMTSLTGDYNLSLFEAPNIGSGNNNYRSALEDLLFDKVTLSDPGYMKGYDECMKKGPPSARDLICAQYVSGYKVLPPLYDANMEAMYTASLTGSIAGSFWTGGLSSAAALPFAQSMFYRMNGIGITQNVLMKNQREIANKFNQALGAMQTGFTATNQAFQKVQDVVNANAQALSKLASELANTFGAISSSIGDILKRLDVLEQEVQIDRLINGRLTSLNAFVSQQLVRSEAAARSSQLAKEKINECVKAQSTRSGFCGQGTHIVSFVINAPNGFYFIHVGYHPQDYVNQTAAYGLCDSSSSKCIAAKNGYFVKNDSDSDSWSYTGSSFYQPEPITSFNSRFVQPEFTFQNLTNNLPPPLLSNNSDVTFEDELEEFYKNITSEIPNFGSISQINTTMLNLSREMSILQQVVKDLNNSYIELKELGNYTYYQKSPWYVWLGFIAGLVALALCLFFILCCTGCGTSCLGKINCTRCCDKYDDFDMPEKIHIH |
Nucleotide
| Nucleotide_Id: NC_039207.1 |
Length: 3993bp |
| Description: Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-174/GER/2012; complete genome |
Source: Betacoronavirus Erinaceus/VMC/DEU/2012 |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 3-Aug-20 |
| Class virus: Coronaviridae |
Virus name: Betacoronavirus |
| CDS: NC_039207.1:21610..25602 |
Host: Erinaceus europaeus |
| Authors: Corman;V.M.; Kallies;R.; Philipps;H.; Gopner;G.; Muller;M.A.; Eckerle;I.; Brunink;S.; Drosten;C. and Drexler;J.F. |
Journal: J. Virol. 88 (1); 717-724 (2014) |
| Title: Characterization of a novel betacoronavirus related to middle East respiratory syndrome coronavirus in European hedgehogs |
db_xref: taxon:1385427; GeneID:37627013; GeneID:37627013; GeneID:37627012; GeneID:37627012; GeneID:37627011; GeneID:37627011; GeneID:37627002; GeneID:37627002; GeneID:37627003; GeneID:37627003; GeneID:37627004; GeneID:37627004; GeneID:37627005; GeneID:37627005; GeneID:37627006; GeneID:37627006; GeneID:37627007; GeneID:37627007; GeneID:37627008; GeneID:37627008; GeneID:37627009; GeneID:37627009; GeneID:37627010; GeneID:37627010 |
| Taxonomy: Betacoronavirus Erinaceus/VMC/DEU/2012 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(30148); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(240); ExactPosition(21692); strand=1); type='gene'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(240); ExactPosition(13584); strand=1); FeatureLocation(ExactPosition(13583); ExactPosition(21692); strand=1); 'join'); type='CDS'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(240); ExactPosition(840); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(840); ExactPosition(2817); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(2817); ExactPosition(8655); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(8655); ExactPosition(10170); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(10170); ExactPosition(11088); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11088); ExactPosition(11964); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11964); ExactPosition(12213); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12213); ExactPosition(12810); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12810); ExactPosition(13140); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(13140); ExactPosition(13560); strand=1); type='mat_peptide'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(13560); ExactPosition(13584); strand=1); FeatureLocation(ExactPosition(13583); ExactPosition(16361); strand=1); 'join'); type='mat_peptide'; location_operator='join'); SeqFeature(CompoundLocation(FeatureLocation(ExactPosition(13560); ExactPosition(13584); strand=1); FeatureLocation(ExactPosition(13583); ExactPosition(13601); strand=1); 'join'); type='mat_peptide'; location_operator='join'); SeqFeature(FeatureLocation(ExactPosition(16361); ExactPosition(18155); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(18155); ExactPosition(19727); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(19727); ExactPosition(20756); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(20756); ExactPosition(21689); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(240); ExactPosition(13605); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(240); ExactPosition(13605); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(240); ExactPosition(840); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(840); ExactPosition(2817); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(2817); ExactPosition(8655); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(8655); ExactPosition(10170); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(10170); ExactPosition(11088); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11088); ExactPosition(11964); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(11964); ExactPosition(12213); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12213); ExactPosition(12810); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(12810); ExactPosition(13140); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(13140); ExactPosition(13560); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(13560); ExactPosition(13602); strand=1); type='mat_peptide'); SeqFeature(FeatureLocation(ExactPosition(21609); ExactPosition(25602); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(21609); ExactPosition(25602); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25619); ExactPosition(25937); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25619); ExactPosition(25937); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25713); ExactPosition(26136); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25713); ExactPosition(26136); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(25890); ExactPosition(26136); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(25890); ExactPosition(26136); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26122); ExactPosition(26794); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26122); ExactPosition(26794); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(26803); ExactPosition(27505); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(26803); ExactPosition(27505); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27578); ExactPosition(27827); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27578); ExactPosition(27827); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27841); ExactPosition(28498); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27841); ExactPosition(28498); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28551); ExactPosition(29826); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28551); ExactPosition(29826); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28597); ExactPosition(29197); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28597); ExactPosition(29197); strand=1); type='CDS') |
| Sequence: ATGATACGCTCAGCGTGTCTACTGATGTGCTTGTTAATGTTTATAAAAGCAACCCCAAGCGAGGGAACATGTATATCTGTTGACATGCAGCCCTCATATTTTATCAAAAATTGGTCTATGCCAATTAATATGAGTAAAGCAGATGGTGTTTTATACCCTGTTGAGCGTACTTATTCTAATATCACAATAACGCTTGAAGGGTTATTTCCACACCAAGCAGATCGTGGTGATATGTATGTTTACTCACAATCTCATAAAGGCAGGCCTTTCATTTCTAATTATTCTCTCGTTACTAATGATTTTGGTAATGGCATAGTAATTAGAATAGGTTCTGCTGCTAATAAAACTGGTAGTCCTATTATTTCTAATATTGCTAGTAACTTTCAGATTATGAAGAAACTTTATCCAGCTTTGCTCTTTGGTAGTGCTGTTGGTAAATTTCCTGCTAATAATAAAACAGGTGCTTATTTTAATCATAGCCTCGTTATTTTGCCCGAAAAATGTGGCACTGTTATTACAGCACTTTATTGTGTTTTAGAGCCCAAGAATGATACCAATTGTACTGGTAGTTCTGGTTATGTTAGTTATGTGCTGTTTGAAAATTTTAGTTGTGATGCAACTACTGATGGTAACTTAAAAAATAGTTTACAGCAGTGGTTTAATATTAAGGATTGTCTTTTTGAGAAAAATTACAATGTTACTGATGATGAGAGGGAAGAGTGGTTTGGAATTATCCAAGATCAGCAAGGTGTCCACCTCTATACATCTCGGAAGAATGGATATTCAAACAATATGTTTTTGTTTGCTACTTTACCAATTTATGATCAGATACTATATTATACTGTTATGCCGCGCAGTATTAATGCTAGTAATTATGCATCATATCATGCTTTTTCTGCATTTTATATTTACAAGTTACACAAAATCAACTATATGGTTGACTTTGATGTAAATGGTTATATCACAAGGGCTGTCGATTGTGGTTATAATGATTATACACAATTGCAATGCTCTTATGGTCAATTTGATATGGATTCTGGTGTTTATTCAGCTTCGTATTTTAATGCCCGCTCTAGAGGTTATTACTATGAAGCTGCAGAACTCACAGAATGTGACTTAGATGTATTGTTTAAAAACGATGCTCCTATAATAGCTAATTACAGTAGGCGAGTTTTTACTAATTGTAATTATAATTTAACAAAACTCCTTTCTCTTGTGCAAGTAGATGAGTTTGTTTGTCATAAAACAACACCAGAAGCGCTTGCTACTGGCTGTTATTCCTCTCTAACGGTAGACTGGTTTGCGCTGCCTTTTAGTATGAAGTCAACATTAGCTATAGGATCAGCAGAAGCTATATCTATGTTTAATTATAATCAGGATTATTCCAATCCTACGTGTAGAATTCATGCAGCTGTAACAGCTAATGTTTCAACAGCGTTGAATTTTACTGCTAATGCTAATTATGCTTATATTTCCAGGTGCCAAGGTGTTGATGGTAAACCAATTCTATTACAACCAGGACAAATGACTAATATTGCTTGTCGTTCTGGTGTTTTGGCACGGCCATCAGATGCAGATTATTTTGGCTATTCATTTCAAGGACGCAACTATTATTTAGGGCGTAAATCTTATAAACCTAAAACCGATGAGGGCGACGTTCAAATGGTTTATGTAATAACGCCTAAATATGATAAAGGCCCTGATACTGTATGCCCTCTTAAAGATATGGGTGCTGCCTCTTCTAGTTTAGATGGCTTGTTAGGGCAGTGCATAGATTATGACATTCATGGAGTAGTAGGCCGTGGTGTTTTTCAAGTTTGCAATACCACAGGAATTGCTAGTCAAATTTTTGTCTATGACGGATTTGGTAATATCATAGGCTTTCATTCTAAAAATGGTACATACTATTGTATGGCACCATGCGTATCAGTACCTGTTTCTGTAATTTATGATAAAAGCAGTGATGTTCATGCTACGCTTTATAGTAGCGTTGAGTGCAATCATATAAAATCAGTTGCAACAGTTTTTAGTCGTCAAACTGAGTCTAAGCTTAGATCGAGTGATAACGGCCTTTTACAAACAGCTGTAGGCTGTGTTATTGGATTCCGTAACACAAGTGACACTGTTGAAGATTGTACCTTACCTTTAGGCCAATCTCTCTGTGCAAAACCACCTTCTTTTTCCAGTCGTAGTACCAATGTTAATAACACATTTGCTTTAGTGCATATGTTGTTCCAAAATCCATTAAAAGTTAGTGTTCTCAATTCAACTGAGTTTCAGGTTTCAATACCTCAGAATTTTAGTTTTGGTATTACTGAAGAATTTATAGAAACATCCATACAAAAGGTTACTGTTGATTGTAAGCAGTATGTTTGTAATGGATTTGAGCGTTGTGAACAATTGTTGGTGCAGTATGGCCAATTTTGTTCAAAAATTAATCAAGCATTACATGGTGTTAATTTGCGCCAAGATGATGCTACTAAGAGTCTTTTTGAGGACATTAAAGTACCCCAATCAGTACCCTTAATGACAAGCCTCACTGGTGATTATAATTTATCATTATTCGAGGCACCTAATATTGGCAGTGGTAATAATAACTACCGCAGTGCTTTAGAAGATCTGCTTTTTGATAAGGTTACATTATCAGATCCAGGTTATATGAAAGGATATGACGAGTGCATGAAAAAAGGACCACCTAGTGCTAGGGACCTAATTTGTGCACAATATGTATCTGGTTATAAAGTTTTACCGCCTTTGTATGATGCTAATATGGAGGCTATGTATACTGCTTCTTTAACTGGTAGTATAGCAGGTTCTTTTTGGACAGGAGGACTATCGTCTGCTGCTGCACTACCATTTGCACAGTCAATGTTTTATCGTATGAATGGTATTGGCATCACTCAAAATGTTCTTATGAAGAACCAGAGGGAGATAGCCAATAAGTTCAACCAGGCATTAGGTGCTATGCAAACAGGATTCACAGCTACCAATCAAGCTTTTCAGAAGGTTCAAGATGTTGTGAATGCCAATGCACAAGCATTATCTAAATTAGCTAGTGAATTAGCTAACACATTCGGTGCTATTTCCTCTTCTATAGGCGACATCTTAAAACGCTTGGATGTTTTAGAACAGGAAGTGCAAATAGACCGCCTTATTAACGGACGTCTCACATCGTTGAATGCGTTTGTAAGTCAGCAACTGGTGAGAAGCGAAGCTGCTGCCCGCTCATCTCAGTTAGCTAAAGAGAAAATTAATGAATGTGTCAAAGCTCAATCCACACGTAGTGGGTTTTGCGGACAAGGCACTCATATAGTGTCATTTGTTATTAATGCTCCTAATGGGTTCTATTTTATACATGTGGGTTATCACCCGCAGGATTATGTGAATCAAACAGCTGCATATGGTCTGTGTGATTCTTCTTCTTCTAAATGCATAGCCGCCAAGAACGGCTATTTTGTTAAAAATGATTCTGATAGTGATAGTTGGTCTTATACAGGCAGTAGTTTTTATCAACCTGAACCTATCACTAGTTTTAACTCGCGCTTTGTTCAGCCTGAGTTTACATTTCAAAATCTAACTAATAACCTTCCACCTCCACTCCTAAGTAATAATAGTGATGTTACTTTTGAGGATGAGCTGGAAGAGTTTTATAAAAATATTACGTCTGAGATACCTAATTTTGGTTCTATCAGCCAGATCAATACCACTATGCTTAACTTGAGTCGAGAAATGAGCATTTTACAACAAGTGGTAAAAGATTTAAACAACTCTTATATAGAGCTTAAAGAATTAGGTAACTACACATACTATCAAAAATCGCCGTGGTATGTGTGGTTAGGTTTCATTGCTGGTCTTGTTGCACTAGCACTATGCTTATTTTTCATACTGTGTTGCACAGGATGTGGCACTAGCTGCCTTGGAAAAATAAATTGTACTCGTTGTTGTGATAAGTATGATGATTTTGACATGCCAGAGAAAATTCACATACATTAA |