| Protein Id: ABP38267.1 |
Length: 1363 aa |
| Description: spike protein Bovine coronavirus R-AH65-TC. |
Molecule type: linear |
| Data category: VRL |
Date: 23-Jul-16 |
| Source: Bovine coronavirus R-AH65-TC |
| Class virus: Coronaviridae |
Virus name: Bovine coronavirus |
| Host: bovine |
Authors: Zhang;X.; Hasoksuz;M.; Spiro;D.; Halpin;R.; Wang;S.; Vlasova;A.; Janies;D.; Jones;L.R.; Ghedin;E. and Saif;L.J. |
| Title: Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation |
Journal: Virology 363 (1); 1-10 (2007) |
| Taxonomy: Bovine coronavirus R-AH65-TC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus. |
| db_xref: """taxon:422215, CDD:293060, CDD:286493, CDD:279881, CDD:223910""" |
| Sequence: MFLILLISLPTAFAVIGDLKCTTVSINDVDTGVPSISTDTVDVTNGLGTYYVLDRVYLNTTLLLNGYYPTSGSTYRNMALKGTLLLSTLWFKPPFLSDFTNGIFAKVKNTKVVKDGVMYSEFPAITIGSTFVNTSYSVVVQPHTTILGNKLQGFLEISVCQYTMCEYPNTICNPNLGNQRVELWHWDTGVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTGVVTKFLFNVYLGTVLSHYYVMPLTCNSALTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNGYTVQPIADVYRRIPNLPDCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPSTWNRRFGFTEQSVFKPQPAGVFTDHDVVYAQHCFKAPTNFCPCKLDGSLCVGSGSGIDAGYKNTGIGTCPAGTNYLTCHNAAQCNCLCTPDPITSKATGPYKCPQTKYLVGIGEHCSGLAIKSDHCGGNPCSCQPQAFLGWSVDSCLQGDRCNIFANFILHDVNSGTTCSTDLQKSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFMIRSCYSGRVSAAFHANSSEPALLFRNIKCNYVFNNTLSRQLQPINYFDSYLGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTKRRSRRSITTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSDCNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFNNALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALEAQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFVNVNNTWMFTGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDLSLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWLLIGFAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIKTSHED |
Nucleotide
| Nucleotide_Id: EF424618.1 |
Length: 4092bp |
| Description: Bovine coronavirus R-AH65-TC; complete genome |
Source: Bovine coronavirus R-AH65-TC |
| Nucleotide_type: RNA |
Molecule type: linear |
| Data category: VRL |
Date: 23-Jul-16 |
| Class virus: Coronaviridae |
Virus name: Bovine coronavirus |
| CDS: EF424618.1:23625..27716 |
Host: bovine |
| Authors: Zhang;X.; Hasoksuz;M.; Spiro;D.; Halpin;R.; Wang;S.; Vlasova;A.; Janies;D.; Jones;L.R.; Ghedin;E. and Saif;L.J. |
Journal: Virology 363 (1); 1-10 (2007) |
| Title: Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation |
db_xref: taxon:422215 |
| Taxonomy: Bovine coronavirus R-AH65-TC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus. |
| Features: SeqFeature(FeatureLocation(ExactPosition(0); ExactPosition(30995); strand=1); type='source'); SeqFeature(FeatureLocation(ExactPosition(194); ExactPosition(13346); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(194); ExactPosition(13346); strand=1); type='CDS'); SeqFeature(FeatureLocation(BeforePosition(13324); ExactPosition(21478); strand=1); type='gene'); SeqFeature(FeatureLocation(BeforePosition(13324); ExactPosition(21478); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(21487); ExactPosition(22324); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(21487); ExactPosition(22324); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(22335); ExactPosition(23610); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(22335); ExactPosition(23610); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(23624); ExactPosition(27716); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(23624); ExactPosition(27716); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27705); ExactPosition(27795); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27705); ExactPosition(27795); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(27872); ExactPosition(28010); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(27872); ExactPosition(28010); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28089); ExactPosition(28419); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28089); ExactPosition(28419); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28405); ExactPosition(28660); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28405); ExactPosition(28660); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(28674); ExactPosition(29367); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(28674); ExactPosition(29367); strand=1); type='CDS'); SeqFeature(FeatureLocation(ExactPosition(29376); ExactPosition(30723); strand=1); type='gene'); SeqFeature(FeatureLocation(ExactPosition(29376); ExactPosition(30723); strand=1); type='CDS') |
| Sequence: ATGTTTTTGATACTTTTAATTTCCTTACCCACGGCTTTTGCTGTTATAGGAGATTTAAAGTGTACTACAGTCTCCATTAATGATGTTGACACTGGTGTTCCTTCTATTAGCACTGATACTGTCGATGTTACTAATGGTTTAGGTACTTATTATGTTTTAGATCGTGTGTATTTAAATACTACGTTGTTGCTTAATGGTTACTACCCTACTTCAGGTTCTACATATCGTAATATGGCACTGAAGGGAACTTTACTATTGAGCACACTGTGGTTTAAACCACCTTTTCTTTCTGATTTTACTAATGGTATTTTTGCTAAGGTCAAAAATACCAAGGTTGTTAAAGATGGTGTAATGTATAGTGAGTTTCCTGCTATAACTATAGGTAGTACTTTTGTAAATACATCTTATAGTGTGGTAGTACAACCACATACTACCATTTTGGGTAATAAATTACAAGGTTTCTTAGAGATCTCTGTTTGCCAGTATACTATGTGCGAGTACCCAAATACGATTTGTAATCCTAATCTGGGCAATCAACGCGTAGAACTATGGCATTGGGATACAGGTGTTGTTTCCTGTTTATATAAGCGTAATTTCACATACGATGTGAATGCTGATTATTTGTATTTCCATTTTTATCAAGAAGGTGGTACTTTTTATGCATATTTTACAGACACTGGTGTTGTTACTAAGTTTCTGTTTAATGTTTATTTAGGCACGGTGCTCTCACATTATTATGTCATGCCTTTGACTTGTAATAGTGCTCTGACTTTAGAATATTGGGTTACACCCCTCACTTCTAAACAATATCTACTAGCTTTCAATCAAGATGGTGTTATTTTTAATGCTGTTGATTGTAAGAGTGATTTTATGAGTGAGATTAAGTGTAAAACACTATCTATAGCACCATCTACTGGTGTTTATGAATTAAACGGTTACACTGTTCAGCCAATTGCAGATGTTTACCGACGTATACCTAATCTTCCCGATTGCAATATTGAGGCTTGGCTTAATGATAAGTCGGTGCCCTCTCCATTAAATTGGGAACGTAAGACCTTTTCAAATTGTAATTTTAATATGAGCAGCCTGATGTCTTTTATTCAGGCAGACTCATTTACTTGTAATAATATTGATGCTGCTAAGATATATGGCATGTGTTTTTCCAGCATAACTATAGATAAGTTTGCAATACCCAATGGTAGGAAGGTTGACCTACAATTGGGTAATTTGGGTTATTTGCAGTCTTTTAACTATAGAATTGATACTACTGCTACAAGTTGTCAGTTGTATTATAATTTACCTGCTGCTAATGTTTCTGTTAGCAGGTTTAATCCTTCTACTTGGAATAGGAGATTTGGTTTTACAGAACAATCTGTTTTTAAGCCTCAACCTGCAGGTGTTTTTACTGATCATGATGTTGTTTATGCACAACATTGTTTTAAAGCTCCCACAAATTTCTGTCCGTGTAAATTGGATGGGTCTTTGTGTGTAGGTAGTGGTTCTGGTATAGATGCTGGTTATAAAAATACTGGTATAGGCACTTGTCCTGCAGGTACTAATTATTTAACTTGCCATAATGCTGCCCAATGTAATTGTTTGTGCACTCCAGACCCCATTACATCTAAAGCTACAGGGCCTTACAAGTGCCCCCAAACTAAATATTTAGTTGGTATAGGTGAGCACTGTTCGGGTCTTGCTATTAAAAGTGATCATTGTGGAGGTAATCCTTGTAGTTGCCAACCACAAGCATTTTTGGGTTGGTCTGTTGACTCTTGTTTACAAGGGGATAGGTGTAATATTTTTGCTAATTTTATTTTGCATGATGTTAATAGTGGTACTACTTGTTCTACTGATTTACAAAAATCAAACACAGACATAATTCTTGGTGTTTGTGTTAATTATGATCTTTATGGTATTACTGGCCAAGGGATTTTTGTTGAGGTCAATGCGACTTATTATAATAGTTGGCAGAACCTTTTATATGATTCTAATGGTAATCTCTATGGTTTTAGAGACTACTTAACAAATAGAACTTTTATGATTCGTAGTTGCTATAGTGGTCGTGTTTCAGCGGCCTTTCATGCTAACTCTTCCGAACCAGCATTGCTATTTCGGAATATCAAATGCAATTACGTTTTTAATAACACTCTTTCACGACAGCTGCAACCTATTAACTATTTTGATAGCTATCTTGGTTGTGTTGTCAATGCTGATAATAGTACTTCTAGTGTTGTTCAAACATGTGATCTCACAGTAGGTAGTGGTTACTGTGTGGATTACTCTACAAAAAGACGAAGTCGTAGATCGATTACCACTGGTTATCGGTTTACTAATTTTGAGCCATTTACTGTTAATTCAGTAAATGATAGTTTAGAACCTGTAGGTGGTTTGTATGAAATTCAAATACCTTCAGAGTTTACTATAGGTAATATGGAGGAGTTTATTCAAACAAGCTCTCCTAAAGTTACTATTGATTGTTCTGCTTTTGTTTGTGGTGATTATGCAGCATGTAAATCACAGTTGGTTGAATATGGTAGCTTCTGTGACAATATTAATGCTATACTCACAGAAGTAAATGAACTACTTGACACTACACAGTTGCAAGTAGCTAATAGTTTAATGAATGGTGTCACTCTTAGCACTAAGCTTAAAGATGGCGTTAATTTCAATGTAGACGACATCAATTTTTCCCCTGTATTAGGTTGTTTAGGAAGCGATTGCAATAAAGTTTCCAGTAGATCTGCTATAGAGGACTTACTTTTTTCTAAAGTAAAGTTATCTGATGTCGGTTTCGTTGAGGCTTATAATAATTGTACTGGAGGTGCCGAAATTAGGGACCTCATTTGTGTGCAAAGTTATAATGGTATCAAGGTGTTGCCTCCACTGCTCTCAGAAAATCAGATCAGTGGATACACTTTGGCTGCCACCTCTGCTAGCCTGTTTCCTCCATGGTCAGCAGCAGCAGGTGTACCATTCTATTTAAATGTTCAGTATCGTATTAATGGTATTGGTGTTACCATGGATGTGCTAAGTCAAAATCAAAAGCTTATTGCTAATGCATTTAACAATGCTCTTGGTGCTATTCAGGAAGGGTTTGATGCTACCAATTCTGCTTTAGTTAAAATTCAAGCTGTTGTTAATGCAAATGCTGAAGCTCTTAATAACTTATTGCAACAACTCTCTAATAGATTTGGTGCTATAAGTTCTTCTTTACAAGAAATTCTATCTAGACTGGATGCTCTTGAAGCGCAAGCTCAGATAGACAGACTTATTAATGGGCGTCTTACCGCTCTTAATGCTTATGTTTCTCAACAGCTTAGTGACTCTACACTAGTAAAGTTTAGTGCAGCACAAGCTATGGAGAAGGTTAATGAATGTGTCAAAAGCCAATCATCTAGGATAAATTTTTGTGGTAATGGTAATCATATTATATCATTAGTGCAGAATGCTCCATATGGTTTGTATTTTATCCACTTTAGCTATGTCCCTACTAAGTATGTCACAGCGAAGGTTAGTCCCGGTCTGTGCATTGCTGGTGGTAGAGGTATAGCCCCTAAGAGTGGTTATTTTGTTAATGTAAATAATACTTGGATGTTCACTGGTAGTGGTTATTACTACCCTGAACCTATAACTGGAAATAATGTTGTTGTTATGAGTACCTGTGCTGTTAATTATACTAAAGCGCCGGATGTAATGCTGAACATTTCAACACCCAACCTCCCTGATTTTAAGGAAGAGTTGGATCAATGGTTTAAAAACCAAACCTCAGTGGCACCAGATTTGTCACTTGATTATATAAATGTTACATTCTTGGACCTACAAGATGAAATGAATAGGTTACAGGAGGCAATAAAAGTTTTAAATCAGAGCTACATCAATCTCAAGGACATTGGTACTTATGAGTATTATGTAAAATGGCCTTGGTATGTATGGCTTTTAATTGGCTTTGCAGGTGTAGCTATGCTTGTTTTACTATTCTTCATATGCTGTTGTACAGGATGTGGGACTAGTTGTTTTAAGAAATGTGGTGGTTGTTGTGATGATTATACAGGACACCAGGAGTTAGTAATTAAAACATCACATGAAGACTAA |